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中华脑科疾病与康复杂志(电子版) ›› 2024, Vol. 14 ›› Issue (06) : 325 -333. doi: 10.3877/cma.j.issn.2095-123X.2024.06.002

临床研究

PLAT基因在胶质瘤中的作用:联合转录组、单细胞转录组和空间转录组的研究
哈丽比热·艾尼瓦尔1, 范海1, 玉素甫·司马义1, 高代熹1, 孜拉来·艾尔肯1, 李汶洳1, 朱国华1,()   
  1. 1.830054 乌鲁木齐,新疆医科大学第一附属医院神经外科
  • 收稿日期:2024-05-21 出版日期:2024-12-15
  • 通信作者: 朱国华
  • 基金资助:
    新疆医科大学第一附属医院青年科研启航专项基金(2022YFY-QKQN-62)

Role of PLAT genes inglioma:combined transcriptome,single-cell transcriptome,and spatial transcriptome studies

Ainiwaer Halibire1, Hai Fan1, Simayi Yusufu1, Daixi Gao1, Aierken Zilalai1, Wenru Li1, Guohua Zhu1,()   

  1. 1.Department of Neurosurgery,The First Affiliated Hospital of Xinjiang Medical University,Urumqi 830054,China
  • Received:2024-05-21 Published:2024-12-15
  • Corresponding author: Guohua Zhu
引用本文:

哈丽比热·艾尼瓦尔, 范海, 玉素甫·司马义, 高代熹, 孜拉来·艾尔肯, 李汶洳, 朱国华. PLAT基因在胶质瘤中的作用:联合转录组、单细胞转录组和空间转录组的研究[J/OL]. 中华脑科疾病与康复杂志(电子版), 2024, 14(06): 325-333.

Ainiwaer Halibire, Hai Fan, Simayi Yusufu, Daixi Gao, Aierken Zilalai, Wenru Li, Guohua Zhu. Role of PLAT genes inglioma:combined transcriptome,single-cell transcriptome,and spatial transcriptome studies[J/OL]. Chinese Journal of Brain Diseases and Rehabilitation(Electronic Edition), 2024, 14(06): 325-333.

目的

通过癌症基因组图谱(TCGA)和基因表达量关联数据库(GTEx)探究组织型纤溶酶原激活物(PLAT)基因在胶质瘤中的表达及预后,为胶质瘤诊断及治疗提供靶点。

方法

利用TCGA 和GTEx数据库分析PLAT 在胶质瘤组织和正常组织间的表达差异,以及PLAT 表达水平与临床病理参数[如性别、年龄、异柠檬酸脱氢酶(IDH)启动子突变状态和1p/19q 是否共缺失等] 之间的关系。采用Kaplan-Meier 生存分析评估PLAT 对胶质瘤患者预后的影响,采用基因本体及京都基因和基因组百科全书数据库富集分析筛选分子功能和信号通路,使用CIBERSORT 算法分析免疫浸润水平与胶质瘤中PLAT 表达水平的相关性,进行单细胞转录组测序和空间转录组测序。

结果

PLAT 在胶质瘤中高表达(P=0.002,95%CI:0.06~0.30),并且在年龄>60 岁(P<0.05,95%CI:1.26~1.88)、IDH 野生型(P<0.05,95%CI:-2.79~-2.46)和1p/19q 未共缺失型(P<0.05,95%CI:-1.41~-0.87)患者中也表现出高表达。PLAT 上调与胶质瘤患者更差的总生存期(OS)相关(HR=6.48,95%CI:4.81~8.74,P<0.001),并具有较高的诊断价值[曲线下面积(AUC)=0.931] ,基于PLAT 表达水平预测的胶质瘤患者1、3和5年生存率AUC值均高于0.7。信号通路分析显示,PLAT显著相关的通路有神经活性配体-受体相互作用、细胞因子-细胞因子受体相互作用、IL-17 信号通路。PLAT 的表达与肿瘤免疫微环境中巨噬细胞M0、滤泡辅助性T 细胞的浸润水平呈正相关,与单核细胞的浸润水平呈负相关。单细胞转录组分析显示,PLAT 在间充质样细胞和少突胶质细胞祖细胞中显著表达。空间转录组分析显示,PLAT 主要分布在靠近肿瘤细胞的位置,与前述定位结果高度一致,且PLAT 表达量与肿瘤细胞含量呈正相关。

结论

PLAT 的表达水平在胶质瘤中显著升高,并与更差的生存率相关,是诊断、治疗及预后的潜在肿瘤标志物。

Objective

To investigate the expression and prognosis of plasminogen activator(PLAT) gene in glioma through The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression(GTEx),and to provide a target for the diagnosis and treatment ofglioma.

Methods

The TCGA and GTEx databases were used to analyze the expression difference of PLAT between gliomatissues and normal tissues. The relationship between PLAT expression level and clinicopathological parameters such as gender,age,isocitrate dehydrogenase (IDH) promoter mutation status and 1p/19q co-deletion; Kaplan-Meier survival analysis of the prognostic value of PLAT in glioma;Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis were used to screen molecular functions and signaling pathways. CIBERSORT algorithm was used to analyze the correlation between immune infiltration level and PLAT expression level in glioma. Single-cell transcriptome sequencing and spatial transcriptome sequencing were performed.

Results

PLAT was highly expressed in glioma (P=0.002,95%CI:0.06-0.30),and was also expressed in 1p/19q non-codeletion[P<0.05,95%CI:-2.79-(2.46)] ,IDH wild-type[P<0.05,95%CI:-2.79-(2.46)] ,patients aged >60 years (P<0.05,95%CI:1.26-1.88),yet was no statistically significant difference in expression between males and females (P>0.05). Upregulation of PLAT gene was associated with worse overall survival (OS)in glioma patients(HR=6.48,95%CI:4.81-8.74,P<0.001)and had a high diagnostic value [area under the curve(AUC)=0.931].The AUC values for predicting of the 1-,3-,and 5-year survival rates of glioma patients based on PLAT expression levels were higher than 0.7.Signal pathway analysis showed that PLAT gene included neuroactive ligand-receptor interaction,cytokine-cytokine receptor interaction and IL-17 signaling pathway. In addition,PLAT expression was positively correlated with the infiltration level of macrophage M0 and follicular helper T cells in the tumor immune microenvironment,but negatively correlated with the infiltration level of monocytes. Single - cell transcriptome analysis further indicated that the PLAT gene was significantly expressed in mesenchymallike cells and oligodendrocyte progenitor cells. The spatial transcriptome results also showed that PLAT was mainly distributed near the tumor cells,which was highly consistent with the above mapping results,and the expression level of PLAT was significantly positively correlated with of tumor cells.

Conclusion

The expression level of PLAT is significantly increased in glioma and is associated with worse survival.PLAT is a potential tumor marker for diagnosis,treatment and prognosis.

图1 不同临床特征的胶质瘤患者中PLAT表达水平比较
Fig.1 Comparison of PLAT expsion level in glioma patients with different clinical characteristics
图2 胶质瘤中PLAT的生存分析结果
Fig.2 Survival analysis results and nomogram of PLAT in glioma
图3 胶质瘤中组织型纤溶酶原激活物基因的诺模图模型
Fig.3 Nomogram model of plasminogen activator gene in glioma
图4 PLAT基因在胶质瘤患者中的GO和KEGG富集分析
Fig.4 GO and KEGG enrichment analysis of PLAT in glioma
图5 胶质瘤中PLAT表达与免疫浸润和分子的相关性
Fig.5 Correlation of PLAT expression with immune infiltration and molecular expression in glioma
图6 PLAT基因的单细胞分析
Fig.6 Single cell analysis of PLAT gene
图7 PLAT基因的空间转录组学分析
Fig.7 Spatial transcriptomic analysis of PLAT gene
图8 组织型纤溶酶原激活物基因的空间转录组定位
Fig.8 Spatial transcriptome localization of plasminogen activator gene
图9 空转分辨率下PLAT基因表达与微环境成分的相关性分析
Fig.9 Correlation analysis between PLAT gene expression and microenvironment components at spatial transcriptomic resolution
[1]
Ostrom QT,Price M,Neff C,et al. CBTRUS statistical report:primary brain and other central nervous system tumors diagnosed in the United States in 2015-2019[J]. Neuro Oncol,2022,24(Suppl 5):v1-v95.DOI:10.1093/neuonc/noac202.
[2]
Gershon R,Polevikov A,Karepov Y,et al.Frequencies of 4 tumorinfiltrating lymphocytes potently predict survival in glioblastoma,an immune desert[J]. Neuro Oncol,2024,26(3):473-487. DOI:10.1093/neuonc/noad204.
[3]
Tondepu C,Karumbaiah L. Glycomaterials to investigate the functional role of aberrant glycosylation in glioblastoma[J]. Adv Healthc Mater,2022,11(4):e2101956. DOI:10.1002/adhm.202101956.
[4]
Li J,Feng L,Lu Y.Glioblastoma multiforme:diagnosis,treatment,and invasion[J].J Biomed Res,2022,37(1):47-58.DOI:10.7555/jbr.36.20220156.
[5]
程亚飞,任长远,李海马,等.FSTL1 基因在胶质瘤发展中作用的研究[J]. 中华神经创伤外科电子杂志,2023,9(4):206-215.DOI:10.3877/cma.j.issn.2095-9141.2023.04.003.Cheng YF,Ren CY,Li HM,et al. Study of the role of the FSTL1 gene in glioma development[J]. Chin J Neurotrauma Surg(Electronic Edition),2023,9(4):206-215. DOI:10.3877/cma.j.issn.2095-9141.2023.04.003.
[6]
Wang X,Gong Z,Wang T,et al. Mechanical nanosurgery of chemoresistant glioblastoma using magnetically controlled carbon nanotubes[J]. Sci Adv,2023,9(13):eade5321. DOI:10.1126/sciadv.ade5321.
[7]
Wen J,Chen W,Zhu Y,et al.Clinical features associated with the efficacy of chemotherapy in patients with glioblastoma (GBM):a surveillance,epidemiology,and end results (SEER) analysis[J].BMC Cancer,2021,21(1):81.DOI:10.1186/s12885-021-07800-0.
[8]
Seillier C,Hélie P,Petit G,et al. Roles of the tissue - type plasminogen activator in immune response[J]. Cell Immunol,2022,371:104451.DOI:10.1016/j.cellimm.2021.104451.
[9]
Díaz VM,Planaguma J,Thomson TM,et al. Tissue plasminogen activator is required for the growth,invasion,and angiogenesis of pancreatic tumor cells[J]. Gastroenterology,2002,122(3):806-819.DOI:10.1053/gast.2002.31885.
[10]
Raigoso P,Junco A,Andicoechea A,et al. Tissue - type plasminogen activator (tPA) content in colorectal cancer and in surrounding mucosa:relationship with clinicopathologic parameters and prognostic significance[J]. Int J Biol Markers,2000,15(1):44-50.DOI:10.1177/172460080001500108.
[11]
Corte MD,Vérez P,Rodríguez JC,et al. Tissue-type plasminogen activator (tPA) in breast cancer:relationship with clinicopathological parameters and prognostic significance[J]. Breast Cancer Res Treat,2005,90(1):33-40.DOI:10.1007/s10549-004-2624-x.
[12]
Ceccarelli M,Barthel FP,Malta TM,et al. Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma[J]. Cell,2016,164(3):550-563. DOI:10.1016/j.cell.2015.12.028.
[13]
Kidoguchi M,Noguchi E,Nakamura T,et al. DNA methylation of proximal PLAT promoter in chronic rhinosinusitis with nasal polyps[J]. Am J Rhinol Allergy,2018,32(5):374 -379. DOI:10.1177/1945892418782236.
[14]
Wang X,Xue D,Zhu X,et al. Low expression of plat in breast cancer infers poor prognosis and high immune infiltrating level[J].Int J Gen Med,2021,14:10213-10224.DOI:10.2147/ijgm.S341959.
[15]
Höpken UE,Rehm A. Homeostatic chemokines guide lymphoma cells to tumor growth - promoting niches within secondary lymphoid organs[J]. J Mol Med (Berl),2012,90(11):1237-1245.DOI:10.1007/s00109-012-0906-z.
[16]
Xiao Y,Wang Z,Zhao M,et al. Single - cell transcriptomics revealed subtype-specific tumor immune microenvironments in human glioblastomas[J]. Front Immunol,2022,13:914236. DOI:10.3389/fimmu.2022.914236.
[17]
Xiong Z,Liu H,He C,et al.Hypoxia contributes to poor prognosis in primary IDH-wt GBM by inducing tumor cells MES-like transformation trend and inhibiting immune cells activity[J]. Front Oncol,2021,11:782043.DOI:10.3389/fonc.2021.782043.
[18]
Caligiuri G,Tuveson DA. Activated fibroblasts in cancer:perspectives and challenges[J]. Cancer Cell,2023,41(3):434-449.DOI:10.1016/j.ccell.2023.02.015.
[19]
Wang H,Wang H,Shen W,et al. Insulin-like growth factor binding protein 2 enhances glioblastoma invasion by activating invasion-enhancing genes[J]. Cancer Res,2003,63(15):4315-4321.
[20]
Kalya M,Kel A,Wlochowitz D,et al.IGFBP2 is a potential master regulator driving the dysregulated gene network responsible for short survival in glioblastoma multiforme[J].Front Genet,2021,12:670240.DOI:10.3389/fgene.2021.670240.
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