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中华脑科疾病与康复杂志(电子版) ›› 2026, Vol. 16 ›› Issue (03) : 135 -149. doi: 10.3877/cma.j.issn.2095-123X.2026.03.002

临床研究

肠道菌群与糖尿病神经病变间的因果推断:通过循环代谢物和蛋白质介导的两步孟德尔随机化研究
刘佳鑫1, 张泽2, 张黎3,()   
  1. 1100000 北京,中日友好临床医学研究所
    2100191 北京,北京大学医学部
    3100029 北京,中日友好医院神经外科
  • 收稿日期:2025-12-09 出版日期:2026-06-15
  • 通信作者: 张黎

Causal inference between gut microbiota and diabetic neuropathy: a two-step Mendelian randomization study mediated by circulating metabolites and proteins

Jiaxin Liu1, Ze Zhang2, Li Zhang3,()   

  1. 1Institute of Clinical Medical Sciences, China-Japan Friendship Hospital, Beijing 100000, China
    2Peking University Health Science Center, Beijing 100191, China
    3Department of Neurosurgery, China-Japan Friendship Hospital, Beijing 100029, China
  • Received:2025-12-09 Published:2026-06-15
  • Corresponding author: Li Zhang
  • Supported by:
    Beijing Natural Science Foundation-Changping Innovation Joint Fund Project(L244029)
引用本文:

刘佳鑫, 张泽, 张黎. 肠道菌群与糖尿病神经病变间的因果推断:通过循环代谢物和蛋白质介导的两步孟德尔随机化研究[J/OL]. 中华脑科疾病与康复杂志(电子版), 2026, 16(03): 135-149.

Jiaxin Liu, Ze Zhang, Li Zhang. Causal inference between gut microbiota and diabetic neuropathy: a two-step Mendelian randomization study mediated by circulating metabolites and proteins[J/OL]. Chinese Journal of Brain Diseases and Rehabilitation(Electronic Edition), 2026, 16(03): 135-149.

目的

采用孟德尔随机化(MR)方法评估肠道菌群(GM)与糖尿病神经病变(DN)间的因果关系,并筛选可能在其中起介导作用的循环代谢物与蛋白质。

方法

GM、DN的全基因组关联研究(GWAS)数据分别来源于MiBioGen联盟及FinnGen联盟R12版本数据集;529种循环代谢物、2994种蛋白质的GWAS数据分别来自2篇已发表文献,相关结果已被GWAS Catalog数据库收录。通过Steiger方向性检验排除GM与DN的反向因果关系,采用两样本MR分析评估GM与DN的因果关系。进一步采用两步法MR、MR中介分析及多变量MR分析筛选可能在上述因果路径中发挥介导作用的循环代谢物与蛋白质。

结果

共有6种GM与DN存在因果关系,其中嗜胆甾醇真杆菌属(P=0.031)和嗜木聚糖真杆菌属(P<0.001)与DN呈负相关,而厚壁菌门(P=0.026)、阿德勒克鲁茨菌属(P=0.022)、另枝菌属(P=0.046)及克里斯滕森菌科R-7群(P=0.009)与DN呈正相关。MR中介分析结果显示,嗜木聚糖真杆菌属可通过上调体内髓样细胞白血病-1蛋白(MCL-1)(P=0.003)及下调HIV-1 Tat交互蛋白2(HTATIP2)(P<0.001)和基质金属蛋白酶-16(MMP-16)(P=0.002)来减轻DN,而厚壁菌门通过降低体内酸性鞘磷脂酶样磷酸二酯酶3A水平(P=0.008)、另枝菌属通过升高循环中X-11423—O-磺基-L-酪氨酸水平(P=0.014)促进DN的进展。

结论

嗜木聚糖真杆菌属通过上调MCL-1、下调HTATIP2及MMP-16,对DN发挥保护作用;厚壁菌门通过降低SMPDL3A、另枝菌属通过升高X-11423—O-磺基-L-酪氨酸促进DN进展。上述发现为DN的微生物-代谢干预提供了新的候选靶点。

Objective

To evaluate the causal relationships between gut microbiota (GM) and diabetic neuropathy (DN) using Mendelian randomization (MR), and to identify circulating metabolites and proteins that may mediate these associations.

Methods

Genome-wide association study (GWAS) data for GM and DN were derived from the MiBioGen consortium and the FinnGen R12 dataset, respectively. GWAS summary statistics for 529 circulating metabolites and 2994 proteins were obtained from two published articles, and their corresponding GWAS results have been deposited in the GWAS Catalog database. The Steiger directionality test was employed to exclude reverse causation between GM and DN. Two-sample MR analysis was conducted to assess the causal effect of GM on DN. Two-step MR, MR mediation analysis, and multivariable MR were further utilized to screen for circulating metabolites and proteins that may mediate the aforementioned causal pathways.

Results

A total of six GM taxa were causally associated with DN. Specifically, Eubacterium coprostanoligenes group (P=0.031) and Eubacterium xylanophilum group (P<0.001) were inversely associated with DN, whereas Firmicutes (P=0.026), Adlercreutzia (P=0.022), Alistipes (P=0.046), and Christensenellaceae R-7 group (P=0.009) were positively associated with DN. MR mediation analysis revealed that Eubacterium xylanophilum group alleviated DN by upregulating myeloid cell leukemia-1 protein (MCL-1) (P=0.003) and downregulating HIV-1 Tat interactive protein 2 (HTATIP2) (P<0.001) and matrix metalloproteinase-16 (MMP-16) (P=0.002). Conversely, Firmicutes promoted DN progression by reducing circulating levels of sphingomyelin phosphodiesterase acid-like 3A (SMPDL3A) (P=0.008), while Alistipes facilitated DN progression by elevating circulating levels of X-11423—O-sulfo-L-tyrosine (P=0.014).

Conclusions

Eubacterium xylanophilum group exerts a protective effect against DN by upregulating MCL-1 and downregulating HTATIP2 and MMP-16. In contrast, Firmicutes promotes DN progression by decreasing SMPDL3A levels, and Alistipes enhances DN progression by increasing X-11423—O-sulfo-L-tyrosine levels. These findings provide novel candidate targets for microbiota- and metabolite-based interventions in DN.

图1 孟德尔随机化方法流程图SNP:单核苷酸多态性
Fig.1 Flowchart of Mendelian randomization analyses
表1 孟德尔随机化分析的数据来源与基本信息
Tab.1 Data sources and basic information used in the Mendelian randomization analyses
图2 基于逆方差加权法的肠道菌群与糖尿病神经病变因果关系的孟德尔随机化散点图A:阿德勒克鲁茨菌属;B:另枝菌属;C:克里斯滕森菌科R-7群;D:嗜胆甾醇真杆菌属;E:嗜木聚糖真杆菌属;F:厚壁菌门;SNP:单核苷酸多态性;DN:糖尿病神经病变;IVW:逆方差加权法;MR-Egger:MR-Egger回归法;WM:加权中位数法;WMode:加权众数法
Fig.2 Mendelian randomization scatter plot of the causal relationship between gut microbiota and diabetic neuropathy based on the inverse variance weighted method
表2 肠道菌群与糖尿病神经病变因果关系的两样本孟德尔随机化分析
Tab.2 Two-sample Mendelian randomization study on causal relationship of gut microbiota on diabetic peripheral neuropathy
图3 肠道菌群与糖尿病神经病变因果关系的留一法敏感性分析图A:阿德勒克鲁茨菌属;B:另枝菌属;C:克里斯滕森菌科R-7群;D:嗜胆甾醇真杆菌属;E:嗜木聚糖真杆菌属;F:厚壁菌门
Fig.3 Leave-one-out plot of the causal relationship between gut microbiota and diabetic neuropathy
图4 肠道菌群与糖尿病神经病变因果关系敏感性分析的森林图A:阿德勒克鲁茨菌属;B:另枝菌属;C:克里斯滕森菌科R-7群;D:嗜胆甾醇真杆菌属;E:嗜木聚糖真杆菌属;F:厚壁菌门;IVW:逆方差加权法;MR-Egger:MR-Egger回归法
Fig.4 Forest plot of sensitivity analysis for the causal relationship between gut microbiota and diabetic neuropathy
图5 基于逆方差加权法的肠道菌群与糖尿病神经病变因果关系漏斗图A:阿德勒克鲁茨菌属;B:另枝菌属;C:克里斯滕森菌科R-7群;D:嗜胆甾醇真杆菌属;E:嗜木聚糖真杆菌属;F:厚壁菌门;IVW:逆方差加权法;MR-Egger:MR-Egger回归法;IV:工具变量
Fig.5 Funnel plot of the causal relationship between gut microbiota and diabetic neuropathy based on the inverse variance weighted method
表3 中介变量与糖尿病神经病变因果关系的两步法孟德尔随机化分析
Tab.3 Mendelian randomization causal relationship results between mediators and diabetic neuropathy
暴露 方法 β P OR 95%CI
循环代谢物          
脯氨酸 WR 1.853 0.012 6.381 1.516~26.865
吲哚-3-乳酸 WR -3.002 0.041 0.049 0.003~0.880
3-羧基-4-甲基-5-丙基-2-呋喃丙酸酯 WR -1.355 0.007 0.259 0.096~0.695
乙酰左旋肉碱 IVW -1.787 0.039 0.167 0.031~0.919
丝氨酸 IVW -2.778 0.001 0.062 0.012~0.329
X-11423—O-磺基-L-酪氨酸 IVW 3.654 0.009 38.632 2.444~610.550
X-11452 WR 1.814 0.011 6.137 1.519~24.783
X-11786—甲基半胱氨酸 WR 1.213 0.039 3.364 1.061~10.662
ADpSGEGDFXAEGGGVR IVW -0.859 0.013 0.424 0.215~0.834
X-12441—12-羟基二十碳四烯酸 WR 0.507 0.016 1.659 1.097~2.510
辛酰肉碱 IVW 0.618 0.040 1.856 1.028~3.352
X-12855 IVW -2.096 0.007 0.123 0.027~0.561
十八二酸盐 IVW -1.970 0.003 0.139 0.037~0.522
循环蛋白质          
蛋白FAM171B WR 0.439 0.027 1.552 1.051~2.291
蛋白FAM213A WR -0.253 0.044 0.777 0.607~0.993
四关节盒蛋白1 IVW -0.209 0.019 0.812 0.682~0.966
半乳糖苷3(4)-L-岩藻糖基转移酶 WR 0.062 0.034 1.064 1.005~1.126
N-乙酰乳糖胺苷β-1,6-N-乙酰氨基葡萄糖基转移酶 WR 0.417 0.008 1.518 1.115~2.066
天冬氨酸氨基转移酶 IVW -0.203 0.008 0.816 0.702~0.948
谷胱甘肽S转移酶ω-1 IVW -0.068 0.027 0.935 0.880~0.992
细胞间黏附分子2 IVW 0.235 0.025 1.344 1.342~1.223
干扰素α/β受体1 WR 0.309 0.021 1.363 1.047~1.773
白细胞介素-13受体亚基α-1 IVW -0.243 0.010 0.784 0.653~0.943
白细胞介素-17受体A IVW -0.233 0.038 0.793 0.636~0.988
白细胞介素-27 WR 0.294 0.026 1.342 1.036~1.738
富含AT相互作用结构域蛋白3A WR 0.367 0.030 1.443 1.036~2.010
激肽释放酶-11 WR 0.085 0.010 1.089 1.020~1.162
激肽释放酶-14 IVW 0.097 0.032 1.102 1.008~1.204
激肽释放酶-7 WR -0.379 0.020 0.685 0.497~0.943
白细胞特异性转录本1蛋白 WR 0.479 0.007 1.615 1.143~2.281
黏膜定向细胞黏附分子1 WR -0.382 0.003 0.68 0.529~0.879
髓样细胞白血病-1蛋白 WR -0.923 0.001 0.397 0.244~0.647
微纤维蛋白相关蛋白2 IVW 0.190 0.029 1.209 1.019~1.436
基质金属蛋白酶-16 WR 0.496 0.003 1.642 1.189~2.265
巨噬细胞甘露聚糖受体1 WR 0.101 0.024 1.107 1.013~1.209
C型甘露糖受体2 IVW -0.173 0.046 0.841 0.710~0.997
神经连接蛋白-3-β IVW -0.278 0.007 0.758 0.618~0.928
脯氨酰4-羟化酶亚基α-2 WR -0.352 0.048 0.703 0.496~0.997
肽基甘氨酸α-酰胺化单加氧酶 IVW 0.073 0.047 1.076 1.000~1.157
原胶原C端肽酶增强因子1 WR -0.229 0.041 0.796 0.639~0.991
蛋白精氨酸N-甲基转移酶3 WR -0.318 0.011 0.728 0.571~0.929
妊娠特异性β-1-糖蛋白2 WR 0.498 0.047 1.646 1.006~2.692
B细胞淋巴瘤6蛋白 WR -0.198 0.036 0.821 0.683~0.987
Ras相关蛋白26 IVW 0.172 0.041 1.187 1.007~1.400
RNF149 WR -0.289 0.021 0.749 0.585~0.958
多聚糖二磷酸二糖-蛋白糖基转移酶亚基1 WR 0.148 0.033 1.159 1.012~1.329
分泌素蛋白 WR 0.584 0.034 1.793 1.046~3.073
14-3-3蛋白σ WR 0.326 0.043 1.385 1.010~1.899
单免疫球蛋白IL-1相关受体 WR -0.063 0.034 0.939 0.885~0.995
SLIT样蛋白和NTRK样蛋白5 WR -0.522 0.019 0.594 0.383~0.920
酸性鞘磷脂酶样磷酸二酯酶3A WR 0.067 0.018 1.069 1.012~1.131
信号转导适配蛋白1 IVW 0.231 0.049 1.260 1.000~1.587
C17orf78 WR 0.226 0.043 1.254 1.007~1.561
含SUN结构域蛋白3 WR -0.238 0.038 0.788 0.629~0.987
TAP结合蛋白 IVW 0.196 0.027 1.217 1.023~1.448
转铁蛋白受体蛋白1 IVW -0.240 0.001 0.787 0.681~0.909
胆汁盐激活脂肪酶 WR 0.350 0.031 1.432 1.033~1.984
补体因子H相关蛋白5 IVW -0.072 0.029 0.931 0.873~0.993
碳水化合物硫转移酶15 WR -0.452 0.017 0.637 0.439~0.922
碳水化合物硫转移酶1 WR -0.357 0.017 0.700 0.523~0.938
肌酸激酶M型 IVW -0.263 0.011 0.769 0.628~0.942
C型凝集素结构域家族2成员 WR -0.307 0.034 0.736 0.554~0.977
CXADR样膜蛋白 WR -0.306 0.001 0.736 0.612~0.886
UMP-CMP激酶 IVW -0.406 0.044 0.666 0.449~0.989
硫酸软骨素N-乙酰半乳糖胺转移酶2 WR -0.307 0.019 0.735 0.569~0.951
分泌型外胚层发育蛋白A WR 0.404 0.040 1.498 1.019~2.203
红细胞生成素 WR -0.408 0.014 0.665 0.480~0.920
受体酪氨酸蛋白激酶ErbB-3 WR -0.345 0.033 0.708 0.516~0.973
结节漏斗肽 WR 0.431 0.001 1.539 1.240~1.910
精子相关抗原11B WR -0.624 0.001 0.536 0.395~0.729
表4 基于逆方差加权法的肠道菌群与循环代谢物/蛋白质因果关联分析
Tab.4 Causal associations between gut microbiota and circulating metabolites/proteins identified using the inverse variance weighted method
肠道菌群 循环代谢物/蛋白质 方法 P β Q Q检验P MR-Egger截距 截距P 全局检验P
厚壁菌门 吲哚-3-乳酸 IVW 0.048 0.056 6.209 0.286 -0.004 0.713 0.292
  肽聚糖识别蛋白 IVW 0.044 -0.223 9.896 0.826 0.008 0.721 0.824
  B细胞淋巴瘤6蛋白 IVW 0.014 -0.272 8.459 0.904 -0.001 0.986 0.907
  Ras相关蛋白26 IVW 0.039 -0.228 5.331 0.989 0.009 0.619 0.992
  多萜醇磷酸寡糖蛋白寡糖转移酶 IVW 0.043 -0.225 15.145 0.441 -0.002 0.939 0.506
  14-3-3蛋白σ IVW 0.045 0.259 20.377 0.158 0.049 0.019 0.153
  酸性鞘磷脂酶样磷酸二酯酶3A IVW 0.008 -0.295 9.078 0.873 0.001 0.984 0.912
嗜木聚糖真杆菌属 天冬氨酸氨基转移酶 IVW 0.019 0.338 7.157 0.519 0.013 0.736 0.565
  HIV-1 Tat相互作用蛋白2 IVW <0.001 -0.615 5.019 0.756 -0.069 0.095 0.787
  髓样细胞白血病-1蛋白 IVW 0.003 0.421 6.357 0.607 -0.023 0.545 0.663
  基质金属蛋白酶-16 IVW 0.002 -0.439 2.896 0.941 0.018 0.622 0.951
  脯氨酰4-羟化酶亚基α‐2 IVW 0.011 0.368 4.268 0.832 0.001 0.971 0.564
嗜胆甾醇真杆菌属 多萜醇磷酸寡糖蛋白寡糖转移酶 IVW 0.022 -0.313 3.574 0.990 0.036 0.312 0.985
克里斯滕森菌科R-7群 细胞间黏附分子2 IVW 0.031 0.353 7.398 0.494 0.047 0.243 0.527
  C17orf78 IVW 0.035 0.347 7.805 0.453 -0.021 0.598 0.444
另枝菌属 髓样细胞白血病-1蛋白 IVW 0.039 0.295 11.99 0.446 0.020 0.631 0.469
  X-11423—O-磺基-L-酪氨酸 IVW 0.014 0.035 9.981 0.273 0.005 0.305 0.308
阿德勒克鲁茨菌属 辛酰基肉碱 IVW 0.023 0.083 1.618 0.997      
  白细胞介素17受体A IVW 0.033 0.361 12.86 0.076 -0.076 0.291 0.098
  激肽释放酶-11 IVW 0.034 0.317 9.992 0.189 -0.104 0.082 0.230
  激肽释放酶-14 IVW 0.031 0.294 8.306 0.306 -0.111 0.067 0.339
  髓样细胞白血病-1蛋白 IVW 0.017 0.299 5.159 0.641 -0.052 0.337 0.681
表5 循环代谢物/蛋白质在肠道菌群与糖尿病神经病变因果关系中的中介分析
Tab.5 Mediation analysis of circulating metabolites/proteins in the causal pathway between gut microbiota and diabetic neuropathy
暴露 循环代谢物/蛋白质 总效应(β) 直接效应(β1) 直接效应(β2) 间接效应(β1×β2) P
嗜木聚糖真杆菌属 髓细胞白血病1蛋白 -0.327 0.421 -0.923 -0.389 0.022
  HIV-1 Tat相互作用蛋白2 -0.327 -0.615 0.107 -0.066 0.031
  基质金属蛋白酶-16 -0.327 -0.440 0.496 -0.218 0.032
  天冬氨酸氨基转移酶 -0.327 0.338 -0.203 -0.069 0.080
  脯氨酰4-羟化酶亚基α-2 -0.327 0.368 -0.352 -0.130 0.118
克里斯滕森菌科R-7群 C17orf78 0.417 0.347 0.226 0.078 0.144
  细胞间黏附分子2 0.417 0.353 0.283 0.100 0.087
嗜胆甾醇真杆菌属 多萜醇磷酸寡糖蛋白寡糖转移酶 -0.334 -0.310 0.148 -0.046 0.119
阿德勒克鲁茨菌属 髓样细胞白血病-1蛋白 0.353 0.300 -0.570 -0.171 0.098
  激肽释放酶-11 0.353 0.317 0.085 0.027 0.102
  辛酰基肉碱 0.353 0.083 0.618 0.051 0.128
  激肽释放酶-14 0.353 0.294 0.097 0.029 0.128
  白细胞介素17受体A 0.353 0.361 -0.233 -0.084 0.138
厚壁菌门 Rab相关蛋白26 0.302 -0.228 0.172 -0.039 0.147
  14-3-3蛋白σ 0.302 0.259 0.326 0.084 0.154
  吲哚-3-乳酸 0.302 0.056 -3.002 -0.169 0.155
  肽基甘氨酸α-酰胺化单加氧酶 0.302 -0.223 0.073 -0.016 0.157
  多萜醇磷酸寡糖蛋白寡糖转移酶 0.302 -0.225 0.148 -0.033 0.142
  酸性鞘磷脂酶样磷酸二酯酶3A 0.302 -0.295 0.067 -0.020 0.047
  B细胞淋巴瘤6蛋白 0.302 -0.272 -0.198 0.054 0.111
另枝菌属 X-11423—O-磺基-L-酪氨酸 0.320 0.035 3.654 0.128 0.045
  髓细胞白血病1蛋白 0.320 0.296 -0.570 -0.169 0.125
表6 肠道菌群与糖尿病神经病变因果通路的多变量孟德尔随机化分析
Tab.6 Multivariable Mendelian randomization analysis of causal pathways between gut microbiota and diabetic neuropathy
菌群 中介变量 暴露 β P
完全介导        
阿德勒克鲁茨菌属 激肽释放酶-11 肠道菌群 0.016 0.467
    循环代谢物/蛋白质 0.414 <0.001
  白细胞介素-17受体A 肠道菌群 0.044 0.076
    循环代谢物/蛋白质 0.216 0.001
嗜木聚糖真杆菌属 HIV-1 Tat相互作用蛋白2 肠道菌群 -0.001 0.977
    循环代谢物/蛋白质 0.250 <0.001
  基质金属蛋白酶-16 肠道菌群 -0.016 0.534
    循环代谢物/蛋白质 0.283 <0.001
  髓细胞白血病1蛋白 肠道菌群 -0.002 0.927
    循环代谢物/蛋白质 -0.292 <0.001
  脯氨酰4-羟化酶亚基α-2 肠道菌群 0.006 0.812
    循环代谢物/蛋白质 0.251 <0.001
厚壁菌门 吲哚-3-乳酸 肠道菌群 -0.030 0.419
    循环代谢物/蛋白质 -3.125 <0.001
部分介导        
阿德勒克鲁茨菌属 激肽释放酶-14 肠道菌群 0.076 <0.001
    循环代谢物/蛋白质 0.479 <0.001
  辛酰基肉碱 肠道菌群 0.121 <0.001
    循环代谢物/蛋白质 -0.936 0.030
另枝菌属 X-11423—O-磺基-L-酪氨酸 肠道菌群 0.216 <0.001
    循环代谢物/蛋白质 3.852 <0.001
  髓细胞白血病1蛋白 肠道菌群 0.247 <0.001
    循环代谢物/蛋白质 0.115 0.003
嗜胆甾醇真杆菌属 多萜醇磷酸寡糖蛋白寡糖转移酶 肠道菌群 0.074 0.001
    循环代谢物/蛋白质 0.708 <0.001
厚壁菌门 酸性鞘磷脂酶样磷酸二酯酶3A 肠道菌群 0.209 <0.001
    循环代谢物/蛋白质 0.254 <0.001
  多萜醇磷酸寡糖蛋白寡糖转移酶 肠道菌群 -0.135 <0.001
    循环代谢物/蛋白质 0.553 <0.001
  Ras相关蛋白26 肠道菌群 -0.226 <0.001
    循环代谢物/蛋白质 0.180 0.002
  14-3-3蛋白σ 肠道菌群 -0.397 <0.001
    循环代谢物/蛋白质 0.575 <0.001
克里斯滕森菌科R-7群 细胞间黏附分子2 肠道菌群 0.107 <0.001
    循环代谢物/蛋白质 0.128 0.004
不介导        
阿德勒克鲁茨菌属 髓细胞白血病1蛋白 肠道菌群 0.062 0.010
    循环代谢物/蛋白质 0.185 0.110
嗜木聚糖真杆菌属 天冬氨酸氨基转移酶 肠道菌群 0.066 0.009
    循环代谢物/蛋白质 -0.060 0.224
厚壁菌门 B细胞淋巴瘤6蛋白 肠道菌群 -0.273 <0.001
    循环代谢物/蛋白质 -0.020 0.730
  肽基甘氨酸α-酰胺化单加氧酶 肠道菌群 -0.285 <0.001
    循环代谢物/蛋白质 -0.646 0.548
克里斯滕森菌科R-7群 C17orf78 肠道菌群 0.152 0.079
    循环代谢物/蛋白质 0.071 0.089
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